PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400018138

Common Name

LOC102579699

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 24859.7 Da PI: 8.2119

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400018138	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.1	1.1e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCda+v +iifs+++klye+s+ PGSC0003DMP400018138 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVGLIIFSPRDKLYEFST 59 8***********************************************96 PP
2	K-box	71.8	2e-24	80	171	6	97
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 + + e++++ +l+++ + L k+ie L++++R+llGe+Les+sl+eLqq+e+qLe+s++ iR++K+e+++eqi +l++ kel++en +L PGSC0003DMP400018138 80 NPDMEQNNMHNLKHNTSSLMKKIELLEKSKRKLLGESLESCSLEELQQMEHQLERSINIIRARKMEVFREQIVRLKENVKELSSENVML 168 4458999*********************************************************************************9 PP K-box 95 rkk 97 +k PGSC0003DMP400018138 169 LEK 171 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.684	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.12E-32	3	74	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-28	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.07E-41	3	75	No hit	No description
Pfam	PF00319	1.0E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-28	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	3.1E-24	83	172	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.811	88	178	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MVRGKTEMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AQVGLIIFSP RDKLYEFSTS 60 SMQEIIERYQ RHTKDIQCEN PDMEQNNMHN LKHNTSSLMK KIELLEKSKR KLLGESLESC 120 SLEELQQMEH QLERSINIIR ARKMEVFREQ IVRLKENVKE LSSENVMLLE KCGGLEMQQT 180 SGGEDVSIVI SSEKSYVETE LFIGLPESCK TKRP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	3e-17	3	72	2	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B	3e-17	3	72	2	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C	3e-17	3	72	2	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D	3e-17	3	72	2	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A	3e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3kov_B	3e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3kov_I	3e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3kov_J	3e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3mu6_A	2e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3mu6_B	2e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3mu6_C	2e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3mu6_D	2e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3p57_A	3e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3p57_B	3e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3p57_C	3e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3p57_D	3e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3p57_I	3e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
3p57_J	3e-17	3	72	2	71	Myocyte-specific enhancer factor 2A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015161756.1	1e-155	PREDICTED: MADS-box protein SOC1-like isoform X1
Refseq	XP_006341728.1	1e-155	PREDICTED: MADS-box protein SOC1-like isoform X1
Swissprot	O64645	6e-79	SOC1_ARATH; MADS-box protein SOC1
TrEMBL	M1AND5	1e-155	M1AND5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400026576	1e-154	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	4e-64	AGAMOUS-like 20

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400018138
Entrez Gene	102579699

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]